"A scientific Dissent from Darwinism"

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Shermana
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"A scientific Dissent from Darwinism"

Post #1

Post by Shermana »

http://www.discovery.org/scripts/viewDB ... oad&id=660

This here is a list of many scientists and PH.D.s of numerous subjects from Genetics to Molecular Biology to Marine Geology
Radiology, Biomedical Engineering, Chemistry, Nuclear Chemistry, Organic Chemistry, Bioengineering, Immunopharmacology, Geoscience, Neuroscience, Pharmacognosy, Physiology, Kineseology, Plant Pathology, Microbiology, Molecular Biophysics, Mathematical Physics, and more, who agree that:
“We are skeptical of claims for the ability of random mutation and natural selection to account for the complexity of life. Careful examination of the evidence for Darwinian theory should be encouraged.�
This was last publicly updated December 2011. Scientists listed by doctoral degree or current position.
Are these scientists all frauds?

Are these people all motivated by personal beliefs over objective evidence?

Are they all being dishonest?

Is their view on the matter unscientific?

Do they have basis for their claim to reject the majority opinion?

Are they being more honest than the majority concensus who accepts that the Darwinian (or "Neo"-Darwinian) approach can assertively be used to define the characteristics of life?

Is there evidence that the majority concensus is using that these PH.D.s and scientists are unaware of or ignoring?

Are they evidence that there is plenty of dissent on the issue of whether Macro-evolution is a "fact"?

Can one just brush off their opinions if the majority disagrees with them?

Is it fair to conclude that their dissent might be based on an objective, empirical examination of the available data and findings?

Is it fair to conclude that those who believe that Neo-Darwinian views CAN assertively account for the diversity of life may be just as biased (i.e. coming from a "naturalistic humanism" viewpoint) in which they base their belief on their pre-determined conclusion?

Is it safe to say that "Macro-evolution" is not a 100% agreed upon fact upon Professional scientists even if the majority support such an idea?

Haven

Post #91

Post by Haven »

The Discovery Institute's "Scientific Dissent From Darwinism" has been debunked here:

http://www.youtube.com/watch?v=YsiWf-ct ... ure=relmfu

Almost none of the biologists on the list actually reject evolution.

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Post #92

Post by THEMAYAN »

RESPONSE TO GOAT.


Before I go on let me quickly adress your responses that were worth responding too. (and by the way I dont require you to paraphrase what you think I really meant,) but I digress. I asked you to provide proof that these people were religiously motivated concerning their scientific views, and you know that is exactly what the challenge was about. Instead of meeting the challenge. You send me evidence that they are Christians. Is this the smoking gun? So by this same standard does this make atheist scientist unqualified to be objective in doing science because they are motivated by atheism or secular humanism? I believe we already went ove this before. So now let me adress your citation.


Quote mining doesn't not mean quoting a person. Quote minning means quoting someone out of context.

This article that you cited (and by the way thank you for citation) is written so badly and filled with so many inaccuracies. I don't even know where to begin. Your own citation seems to do it's own fare share of quote mining. The only difference is, instead of quoting out of context, it paraphrases out of context and actually contradicts itself. Let me give you some examples. In fact I would have preferred if they had used more actual quotes from those defending ID. I guess they found it easier to paraphrase out of context.

Casey Luskin did not quote the Judge out of context. What Talks Origins is trying to do is write an unofficial post trial brief by implying and without any proof and in spite of the judges own words, that what the judge really meant was something else. They claim he is being unfair, but don't blame Luskin. Blame the judge. Those were his words. T.O. criticizes Luskin for leaving out the words in small case letters as follows….
IT HAS FAILED TO PUBLISH IN PEER-REVIEWED JOURNALS, engage in research and testing, and gain acceptance in the scientific community.


I contend that he has not left out those words in his writings and if he ever did anywhere else, then it is still non relevant and a moot point because Luskin has never even tried to imply that ID held a majority consensus and in fact has continuously said that ID is in the minority, and as for research. Many article are published making correlation's based on the previous work of others. Dawkins and even Eugenie Scott have done this many times before. Furthermore, Bill Dembski and Stephen C. Meyer's have done extensive research and testing of ID theory. I may add that ID has gained acceptance in the science community even if that acceptance only represents a small but growing minority. I also find it very interesting that in another article posted by T.O., they admit and provide a partial list of peer review data published by ID theorist concerning the subject of ID as early as 2005. The trial started in sept of 2005 and some of these articles predate the trial..http://www.talkorigins.org/indexcc/CI/CI001_4.html This seems to contradict their take that there were no peer review articles published on ID.

T.O's response is……
Even by the most generous criteria, the peer-reviewed scientific output from the intelligent design (ID) movement is very low, especially considering the long history and generous funding of the movement. The list of papers and books above is not exhaustive, but there is not a lot else. One week's worth of peer-reviewed papers on evolutionary biology exceeds the entire history of ID peer-review.

Again a moot point since science is not based on a majority rule. They also try to marginalized, cherry pick and quote mine from these articles themselves. And contrary to their claim, intelligent design has a very short history compared to neo Darwinism and has nowhere near the funding. Furthermore, since then, the amount of peer review articles has increased several fold. I also might add that no one disputes that some type of evolution takes place if we are to define evolution as change over time. Notice how they did not use the word neo Darwinism evolution, or evolutionary change as defined by the modern synthesis which is the current axiom. I already explained these terms in previous threads. If you have any questions concerning these distinctions then see previous threads.
The one article referenced by both Professors Behe and Minnich as supporting ID is an article written by Behe and Snoke entitled "Simulating evolution by gene duplication of protein features that require multiple amino acid residues." (P-721). A review of the article indicates that it does not mention either irreducible complexity or ID. In fact, Professor Behe admitted that the study which forms the basis for the article did not rule out many known evolutionary mechanisms and that the research actually might support evolutionary pathways if a biologically realistic population size were used. (Citations omitted)
This may have been the one article reference by Behe but it wasn't the only article submitted by the DI. This fact is virtual ignored by T.O. article.
The paragraph does not even provide citation for said review, and the fact that Behe did not rule out evolutionary mechanics does not pertain to its likely hood or statistical probability, hence plausibility, and the phrase "if a biologically realistic population size were used" does not even attempt to define what would be considered "realistic". This is inferred and another attempt to quote out of context. I may add that even Eugenie Scott who was an adviser for the plaintiff in Dover admits that irreducible complexity is a valid scientific term as used by ID theorist. Another little known fact that T.O. has also failed to mention. Also note that there are at least a few mainstream scientist today who are opposed to Behes construct of irreducible complexity and are currently attempting to falsify it, but with still little success. This in itself proves that IC is a scientific construct. Again, a fact that even Eugenie scott admits too.

We see from this that the Judge, in fact, discussed a peer-reviewed article by Behe and Snoke but found it did not support ID. Instead, the article tried (unconvincingly) to rule out one common genetic mechanism of evolution but not all such mechanisms. For a more detailed discussion about this, see the article "Theory is as Theory Does" at The Panda's Thumb.
They actual contradict the judge who said….
In addition to failing to produce papers in peer-reviewed journals.
Here they admit that there was indeed "a peer-reviewed article by Behe and Snoke" Again a distortion and a classic case of quote mining itself by paraphrasing. I will clarify below.

Behe never said or claimed that some evolutionary mechanisms were not valid and in fact I know of no one who does make this claim. So trying to use this next sentence as a non qualifier only makes my point.….. E.g. '
Instead, the article tried (unconvincingly) to rule out one common genetic mechanism of evolution but not all such mechanisms"
This is also another example of cherry picking Behe's work. It is also an example of a judge who is not even qualified as a scholarly peer, to peer review an article that already passed an initial peer review by referee scholars just to get it published.

T.O. goes on to quote mine this statement….
On cross-examination, Professor Behe admitted that: "There are no peer reviewed articles by anyone advocating for intelligent design supported by pertinent experiments or calculations which provide detailed rigorous accounts of how intelligent design of any biological system occurred." (22:22-23 (Behe))
What they don't tell you is that Behe has said the same about the lack of rigorous detailed accounts for a Neo Darwinian causation. What else I find interesting is that to people who are not court savvy. This quote would leave them with the impression that those were Behes words, when they were actually the words of a sharp lawyer, and we all know that lawyers are not paid to accommodate the opposing parties contextual explanations. They're paid to win cases by any means possible including quote mining.

SUMMARY
You have not provided any proof that Casey Luskin or anyone else quoted anyone out of context. And again, if he has ever left the out the words concerning the fact that ID was a minority, or that neo Darwinist are in the majority, or any other way you want to phrase it. Its a moot point since a majority consensus has never been the claim, and the DI has repeated this over and over.

I may add that of to date there are now at least 50 peer review articles and growing concerning intelligent design.
http://www.discovery.org/a/2640

Last but not least, let me supply proof that Casey Luskin has not cherry picked or quote mined the judges ruling, and in fact includes these word in his own articles. Again I repeat that Casey Luskin has written in his own words what the judge actually said, including the full quote and omitting nothing as shown in link below. Therefore the writer of the T.O. article that you cited is either ignorant or a liar.
http://www.ideacenter.org/contentmgr/sh ... hp/id/1475

I also suggest you actually watch the video Traipsing Into Evolution: which is what T.O. is belly aching about. Forty two minutes into the video he also cites full quote which T.O. accuses him of omitting. The book actually goes into further detail.

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Post #93

Post by TheJackelantern »

I may add that of to date there are now at least 50 peer review articles and growing concerning intelligent design.
http://www.discovery.org/a/2640
I'm curious, have you bothered to read the journals in question? I don't think they say what you think they say as none of them actually invalidate evolutionary theory.. I almost wonder how many people actually take to time to read them.. Some of them aren't actually peer reviewed however..

And btw, most of behe's arguments have been debunked. I actually addressed him specifically in another thread...
Again a moot point since science is not based on a majority rule. They also try to marginalized, cherry pick and quote mine from these articles themselves.
except that you are using this argument to ignore the science / evidence.. That in itself is a problem with your position.
This is also another example of cherry picking Behe's work. It is also an example of a judge who is not even qualified as a scholarly peer, to peer review an article that already passed an initial peer review by referee scholars just to get it published.
It's not cherry picking simply because there are several problems with his work. Many of which other scientists have already pointed out. Much of it comes from the fact that he only has a PHD in biotechnology.. He often tries to conform his work into a bio-engineering frame work and often falls apart because it requires ignoring all sorts of things that deal with biochemistry and biological evolution.. This to which includes ignoring the fact that DNA duplication is never without error.. This alone kills most of his work in several areas. So when you have to intentionally ignore 99 percent of all the science involved in order to conform something to your religious beliefs, there is a problem with you, and your science..

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Post #94

Post by THEMAYAN »

Quote:
I may add that of to date there are now at least 50 peer review articles and growing concerning intelligent design.
http://www.discovery.org/a/2640

I'm curious, have you bothered to read the journals in question? I don't think they say what you think they say as none of them actually invalidate evolutionary theory.. I almost wonder how many people actually take to time to read them.. Some of them aren't actually peer reviewed however..
All the examples given are peer reviewed and yes I have read many of them. And they do make a case for ID, and many of them specifically challenge the neo Darwinian synthesis. I have gone over this extensively on my previous threads.

I'm sorry you came in late but I have already repeated my responses to many of these questions many times. See previous threads. I might add that you dont need to refer to ID theorist to find peer review challenges to the neo Darwinian synthesis/modern synthesis, again I have spoken of this in previous threads. Take a look. If you have a challenge to Behe's IC, then I'm willing to listen. I know that Miller and others have tried but with little succes especially with using the TTSS analogy, but if you have new data, then I'm all ears. Why dont you start with the Bacteria flagellum and then you can give other examples so as to not unnecessarily complicate the subject more than it it already is. I.e one e.g. at a time.

And btw, most of behe's arguments have been debunked. I actually addressed him specifically in another thread...
Quote:
Again a moot point since science is not based on a majority rule. They also try to marginalized, cherry pick and quote mine from these articles themselves.

except that you are using this argument to ignore the science / evidence.. That in itself is a problem with your position
.

My response was in addressing an article that accuse C. Luskin of quote mining. The person who sent thread offered no evidence for me to respond to concerning evolution theory. By the way I would love to hear your your discussion/debate with him. Can you give me the link? I have corresponded with him a few times and no matter what you think of his science, he is a pretty nice and humble person.

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Post #95

Post by TheJackelantern »

All the examples given are peer reviewed and yes I have read many of them. And they do make a case for ID, and many of them specifically challenge the neo Darwinian synthesis. I have gone over this extensively on my previous threads.
Umm no they don't.. And you ignore the fact the modern evolutionary theory is well beyond Darwinian synthesis.. like I said, your position requires ignoring pretty much the last 150 years of science on the subject. I've read several of them and none of them make a standing case for ID as none of them are actually in conflict with modern evolutionary theory.

for example:
1. Limitations of the chemical origin of life data to explain the origin of DNA
2. Limitations of mutation and natural selection theories to address the irreducible complexity of the cell
3. Limitations of transitional species data to account for the multitude of changes involved in the transition.
Much of this has already been debunked.. And even largely requires you to actually ignore the periodic table or what electromagnetism is, or even what energetics is. It also ignores what the differences are of atoms and how that relates to the bio and chemical diversity... This alone destroys the irreducibility argument. It's not even worth discussing. :/

Worse yet, the entire creationist argument depends on the complexity argument while ignoring entirely that this argument collapses their position when applied to to their beliefs, and their supposed conscious deity. Hence, they don't consider the problem in dealing with the complexity issue around what is required to support a conscious state, or the fact that such a state is required to need the same base mechanism as evolution does to function, be of process, and to be an emergent property.. Creationism falls on it's face entire in this regard, and can thus easily be dismissed on this premise alone.
ID theorist
We can't call anything they have as a basis for a theory.. They don't have any empirical evidence sufficient enough to even establish a hypothesis.. It's loose play of a gaps game at best.
to find peer review challenges to the neo Darwinian synthesis/modern synthesis
That's great because it's entirely meaningless giving natural selection is only but one mechanism that helps drive evolution.. Your problem sits with the fact that you try to focus on one mechanism and then state it alone can't account for all the biodiversity and complexity... It ignores an energetic system to which is a complex adaptive system capable of self-organization just by the fact that the system has feedback... Hence, when ever forces come together in harmony, you get order from chaos.. Shapes emerge, complexity arises and you can get things like snowflakes, life, and ourselves. ..without such a system, you wouldn't be here or be possible. Nor would consciousness be possible.
If you have a challenge to Behe's IC, then I'm willing to listen.
Go read the other posts that deal with evolution in the science forum... I've well addressed much of Behe's arguments.
My response was in addressing an article that accuse C. Luskin of quote mining
And I am addressing the fact that ignoring all the science because you think it's a play on appeal to popularity is a bad argument to make. I don't care about such a appeals, I care more about your ability to actually address the science and evidence..

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Post #96

Post by THEMAYAN »

Quote:

All the examples given are peer reviewed and yes I have read many of them. And they do make a case for ID, and many of them specifically challenge the neo Darwinian synthesis. I have gone over this extensively on my previous threads.

Umm no they don't.. And you ignore the fact the modern evolutionary theory is well beyond Darwinian synthesis.. like I said, your position requires ignoring pretty much the last 150 years of science on the subject. I've read several of them and none of them make a standing case for ID as none of them are actually in conflict with modern evolutionary theory.
for example:
Quote:

1. Limitations of the chemical origin of life data to explain the origin of DNA
2. Limitations of mutation and natural selection theories to address the irreducible complexity of the cell
3. Limitations of transitional species data to account for the multitude of changes involved in the transition.
First off what are you citing or quoting from. Please be specific. Give citation.


Much of this has already been debunked.. And even largely requires you to actually ignore the periodic table or what electromagnetism is, or even what energetics is. It also ignores what the differences are of atoms and how that relates to the bio and chemical diversity... This alone destroys the irreducibility argument. It's not even worth discussing. :/

Worse yet, the entire creationist argument depends on the complexity argument while ignoring entirely that this argument collapses their position when applied to to their beliefs, and their supposed conscious deity. Hence, they don't consider the problem in dealing with the complexity issue around what is required to support a conscious state, or the fact that such a state is required to need the same base mechanism as evolution does to function, be of process, and to be an emergent property.. Creationism falls on it's face entire in this regard, and can thus easily be dismissed on this premise alone.


ID theorist


We can't call anything they have as a basis for a theory.. They don't have any empirical evidence sufficient enough to even establish a hypothesis.. It's loose play of a gaps game at best.
to find peer review challenges to the neo Darwinian synthesis/modern synthesis

That's great because it's entirely meaningless giving natural selection is only but one mechanism that helps drive evolution.. Your problem sits with the fact that you try to focus on one mechanism and then state it alone can't account for all the biodiversity and complexity... It ignore an energetic system to which is a complex adaptive system capable of self-organization just by the fact that the system has feedback... Hence, when ever forces come together in harmony, you get order from chaos.. Shapes emerge, complexity arises and you can get things like snowflakes, life, and ourselves. ..without such a system, you wouldn't be here or be possible. Nor would consciousness be possible.


Quote:
If you have a challenge to Behe's IC, then I'm willing to listen.

Go read the other posts that deal with evolution in the science forum... I've well addressed much of Behe's arguments.


I asked for a link and your debate with Behe. Give it to me and I will take a look.

Quote:
My response was in addressing an article that accuse C. Luskin of quote mining

And I am addressing the fact that ignoring all the science because you think it's a play on appeal to popularity is a bad argument to make. I don't care about such a appeals, I care more about your ability to actually address the science and evidence.
.

Again I ask you to read my previous threads. I hate to repeat myself over and over again especially concerning the (neo Darwinian synthesis) which is also referred to as the (modern synthesis) not to be confused with classical Darwinism, and this is what is taught in schools and this is the theory that was presented at Dover. I have already adressed the (150 years of evidence mantra) again please see previous threads.

I have also spoken of the proposed extended synthesis and the Altenberg 16 summit which by the way use some of the same examples in there criticism of the current synthesis as the ones you cited above but actually go much further and not only questions the role and limitations of natural selection but of many other dogmas and assumptions of the theory. I gave a list of those assumptions in previous threads and the link that put it into context. I even addressed the self organization models proposed in this new extended synthesis.

I asked if you could stick to one subject at a time. You said that you could refute IC but you now mention electromagnetism and the periodic table as if just mentioning this means anything. Im sure that atoms relate to everything but this is to general of an example. I am not speaking of creationism or religion. It is you who has brought it up. I can appreciate your philosophy and philosophy is important but I was asking for specific refutation.

Again why dont you start by giving me a specific example of how irreducible complexity has been refuted? For example Kenneth Miller uses the Type Three secretion system as an analogy and he goes into great detail in trying to make an argument as to why he thinks its a valid analogy. Unfortunately he fails, but at least he can produce a cohesive argument and does not resort to a vague type of refutation nor does he just resort to just saying that chemistry and physics alone can account for all this nano machinery we see in the cell including the bacterial flagellum. Even if he does believes that chemistry and physics alone can accomplish the task, he knows as a scientist this explanation is just to vague.

If you continue to bring things up that I have repeatedly gone over then that means you did not take the time to read my previous statements and I refuse to repeat myself over and over. If you have contention with what I have said in the past, then make a cohesive arguments based on that. If not, then its just a waste of time.

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Post #97

Post by THEMAYAN »

By the way TheJackelantern if you want to read a peer reviewed article in a respected Journal that challenges your contention that physics and chemistry alone can account for these complex systems of life, including life itself not to mention modern evolutionary theory then take a look at the Journal Life. The article is entitled. Is Life Unique? Its free to download.

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Post #98

Post by Goat »

THEMAYAN wrote:By the way TheJackelantern if you want to read a peer reviewed article in a respected Journal that challenges your contention that physics and chemistry alone can account for these complex systems of life, including life itself not to mention modern evolutionary theory then take a look at the Journal Life. The article is entitled. Is Life Unique? Its free to download.
Gosh, I read a couple of those 'peer reviewed' articles, and frankly, I would be ASHAMED to say they are anything more than essays.

The 'is life unique' doesn't mention intelligent design for one, and is more speculative than anything else.

If that is the level of scholarship that has to be claimed for I.D., no wonder it's more political than anything else.
“What do you think science is? There is nothing magical about science. It is simply a systematic way for carefully and thoroughly observing nature and using consistent logic to evaluate results. So which part of that exactly do you disagree with? Do you disagree with being thorough? Using careful observation? Being systematic? Or using consistent logic?�

Steven Novella

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Post #99

Post by TheJackelantern »

First off what are you citing or quoting from. Please be specific. Give citation.
If you had to ask this, it tells me you hadn't actually bothered to even read the first one on the list.. The citation is quoted..

to find peer review challenges to the neo Darwinian synthesis/modern synthesis
You do know that some of those papers are not actually peer reviewed right? And you clearly ignore why we are well beyond Darwinian synthesis. But I love how you now try to modify your argument to include "Modern synthesis" Do you even have any clue as to what I am talking about? For example, do you deny horizontal gene transfers when these things are observed and well documented? Your argument is very lacking here sir, and I have yet to see you post anything of merit on the subject :/
I asked for a link and your debate with Behe. Give it to me and I will take a look.
Ok, :

examples of Micheal Behe:

http://litcandle.blogspot.com/2005/10/a ... -many.html

And it's even worse when Following a trial, Behe wrote another book called "The Edge of Evolution," where he says that Darwinian evolution DOES exist, even though he says its role is limited. This is a clear shift from his position in "Darwin's Black Box," where he denied Darwinian evolution outright. His own university discredited him.

Irreducible complexity has been shot down on a number of occasions, most notably in the court case Kitzmiller v. Dover Area School District. Behe was the primary witness/expert for the defense, arguing against evolution using irreducible complexity and also trying to support ID as a legitimate science. Behe failed miserably on both counts in this case.

Case in point, the flagellum, one of the key aspects of Behe's case. Here's a neat video that sums it up with pictures and a description of research done in 2003 on the subject of how it could have evolved.

[youtube][/youtube]

Especially in reference to actual peer reviewed material:

http://www.talkdesign.org/faqs/flagellum.html

Yep, there is a reason why he's discredited and doesn't have any peer reviewed material on any of the subjects he talks about. He doesn't even hold PHD's in 99 percent of the fields he talks about. And he actually has no real peer reviewed accepted material to which hasn't been rejected. As one other theist tried use as an excuse:
Michael Behe also apparently bypassed the peer review process, most likely because he felt no one in the scientific community would support his views. I believe it is good practice to have research reviewed, as it may help minimize error and confusion. Most likely, one would want someone whom they can trust to be honest in their evaluation.

And you can find much of Creationist pseudoscience debunked here:

http://topdocumentaryfilms.com/why-do-p ... ationists/

Again I ask you to read my previous threads. I hate to repeat myself over and over again especially concerning the (neo Darwinian synthesis) which is also referred to as the (modern synthesis) not to be confused with classical Darwinism, and this is what is taught in schools and this is the theory that was presented at Dover. I have already adressed the (150 years of evidence mantra) again please see previous threads.
I don't even think you know what modern understanding of evolution is if you are trying to equate it to Darwinian synthesis.. Your previous threads I gather wouldn't hold anything of interest or value..nor practical application.
I have also spoken of the proposed extended synthesis and the Altenberg 16 summit which by the way use some of the same examples in there criticism of the current synthesis as the ones you cited above but actually go much further and not only questions the role and limitations of natural selection but of many other dogmas and assumptions of the theory.
You can have all the questions you want, but when you provide nothing of value to back up your assertions there is nothing we can work with here. So far what you have posted is either completely wrong, or doesn't actually do anything in regards to challenging evolution.. You want to sit here and label stuff as dogmas, but that is about all I see you doing here. Those are conversation enders and are entirely meaningless to this debate.

I gave a list of those assumptions in previous threads and the link that put it into context. I even addressed the self organization models proposed in this new extended synthesis.
You haven't outlined anything it this regard, or outlined anything we can evaluate here. What I am getting from you here is that you want to play a game of calling everything "assumptions" and yet you can't provide me a single piece of peer reviewed work that would even remotely establish your position... Nor have you addressed any of my points made here, or my questions..
I asked if you could stick to one subject at a time. You said that you could refute IC but you now mention electromagnetism and the periodic table as if just mentioning this means anything.


Um yes it means a lot.. And is suggest you begin there before you can move on in this subject. If you can't understand those, there is no point in discussing this with you.
Im sure that atoms relate to everything but this is to general of an example.
And how does electromagnetism relate to atoms and self-organizing systems? Do you know?
Again why dont you start by giving me a specific example of how irreducible complexity has been refuted?
It's been refuted:

[youtube][/youtube]
[youtube][/youtube]
[youtube][/youtube]
[youtube][/youtube]
[youtube][/youtube]
[youtube][/youtbe]
[youtube][/youtube]

Prime literature:

http://www.physorg.com/news64046019.html
Biological Sciences - Evolution

Abigail Clements,
Dejan Bursac,
Xenia Gatsos,
Andrew J. Perry,
Srgjan Civciristov,
Nermin Celik,
Vladimir A. Likic,
Sebastian Poggio,
Christine Jacobs-Wagner,
Richard A. Strugnell,
and Trevor Lithgow

The reducible complexity of a mitochondrial molecular machine PNAS 2009 106 (37) 15791-15795; published ahead of print August 26, 2009, doi:10.1073/pnas.0908264106
The reducible complexity of a mitochondrial molecular machine...The challenge of irreducible complexity . Nat Hist 111 : 74 . 8 Miller...Supporting Information (PDF) The reducible complexity of a mitochondrial molecular machine...
Full Text (PDF)
Biological Sciences: Biochemistry

David R. Eyre and
Melvin J. Glimcher

Reducible Crosslinks in Hydroxylysine-Deficient Collagens of a Heritable Disorder of Connective Tissue PNAS 1972 69 (9) 2594-2598
Reducible Crosslinks in Hydroxylysine-Deficient Collagens of a...ildren's Hospital Medical Center, Boston, Massachusetts 02115 Reducible compounds that participate in crosslinking were analyzed...would explain the findings of an abnormal profile of reducible compounds despite an almost normal total hydroxylysine...

Full Text (PDF)
Research Article

M O Longas and
K Meyer

Evidence that a reducible xylosyl-lysine is the protein linkage of dermatan sulfate PNAS 1982 79 (20) 6225-6228
Evidence that a reducible xylosyl-lysine is the protein linkage...sulfate-protein bond. The data indicate that a reducible xylosyl-lysine is the protein linkage...ligamentum nuchae. Evidence that a reducible xylosyl-lysine is the protein linkage...

Full Text (PDF)
erspective - Supramolecular Chemistry and Self-Assembly Special Feature

Jean-Marie Lehn

Supramolecular Chemistry And Self-assembly Special Feature: Toward complex matter: Supramolecular chemistry and self-organization PNAS 2002 99 (8) 4763-4768; published ahead of print April 2, 2002, doi:10.1073/pnas.072065599
...defining a given level of complexity result from and may be explained

Full Text (PDF)
Biological Sciences - Biochemistry

Jiqiang Ling and
Dieter Söll

Severe oxidative stress induces protein mistranslation through impairment of an aminoacyl-tRNA synthetase editing site PNAS 2010 107 (9) 4028-4033; published ahead of print February 16, 2010, doi:10.1073/pnas.1000315107
...acid further forms a disulfide, which is reducible by DTT but not by sodium arsenite. The...sulfenic acids and disulfide bonds are reducible by cellular reductants such as thioredoxin and glutaredoxin (6). Oxidation...another thiol. Cys sulfenic acids are reducible by NaAsO2 or DTT, while disulfides can...

Full Text (PDF)
Other scholar sources:
The reducible complexity of a mitochondrial molecular machine
[HTML] from pnas.org

A Clements, D Bursac, X Gatsos… - Proceedings of the …, 2009 - National Acad Sciences Abstract Molecular machines drive essential biological processes, with the component parts of these machines each contributing a partial function or structural element. Mitochondria are organelles of eukaryotic cells, and depend for their biogenesis on a set of molecular ...

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Modules with reducible complexity
[PDF] from arxiv.org
PA Bergh - Journal of Algebra, 2007 - Elsevier For a commutative Noetherian local ring we define and study the class of modules having reducible complexity, a class containing all modules of finite complete intersection dimension. Various properties of this class of modules are given, together with results on ...

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Evolution of hormone-receptor complexity by molecular exploitation
[PDF] from winthrop.edu JT Bridgham, SM Carroll… - Science, 2006 - sciencemag.org... 0504627, and a Sloan Research Fellowship to JWT. The editors suggest the following Related Resources on Science sites. In Science Magazine. EVOLUTION Reducible Complexity: Christoph Adami. Science 7 April 2006: 61-63
Evolution Of Irreducible Complexity Explained
April 12, 2006

Using new techniques for resurrecting ancient genes, scientists have for the first time reconstructed the Darwinian evolution of an apparently "irreducibly complex" molecular system.
Other source material:

http://skeptico.blogs.com/skeptico/2005 ... e_com.html
http://noblesseoblige.org/2009/05/27/ir ... ked-again/
http://www.thedailybeast.com/newsweek/b ... erall.html

But we can even ignore all of that and just go right to the heart of problem of claiming irreducible complexity, or that complexity can only magically come from some conscious entity / creator. So what really kills the irreducible complexity argument is the complexity of consciousness itself and how that is also subject to reducibility! Consciousness can't exist without cause.. And thus is subject to reducibility itself. That alone destroys the entire argument ID vs evolution and complex adaptive and self-organizing systems. So let's explore this:

So here is a good article to read:

Information: The material physical Cause of causation

Abstract:
* Conscious Mechanical Self-Organization

Abstract:

The evolution of consciousness is seen in the context of energy driven evolution in general, where energy and information are understood as two sides of the same coin. From this perspective consciousness is viewed as an ecological system in which streams of cognitive, perceptual, and emotional information form a rich complex of interactions, analogous to the interactive metabolism of a living cell. The result is an organic, self-generating, or autopoietic, system, continuously in the act of creating itself. Evidence suggests that this process is chaotic, or at least chaotic-like, and capable of assuming a number of distinct states best understood as chaotic attractors
Or you can watch these videos:

Scientists Extract Images from the Mind

Computer Chips Fused with Brain Cells

Robot controlled by braincells

[youtube][/youtube]


And:

And if you really need an in depth understanding of information science in relation to cognitive systems, complex adaptive systems, and physical systems theory. So here is something you can reference all of this to get a better understanding of the field:
Information theory is closely associated with a collection of pure and applied disciplines that have been investigated and reduced to engineering practice under a variety of rubrics throughout the world over the past half century or more: adaptive systems, anticipatory systems, artificial intelligence, complex systems, complexity science, cybernetics, informatics, machine learning, along with systems sciences of many descriptions. Information theory is a broad and deep mathematical theory, with equally broad and deep applications, amongst which is the vital field of coding theory.
This article largely discusses complex systems as a subject of information and the attempts to emulate physical complex systems with emergent properties. For other scientific and professional disciplines addressing complexity in their fields see the complex systems article and references.
A complex system is a system composed of interconnected parts that as a whole exhibit one or more properties (behavior among the possible properties) not obvious from the properties of the individual parts.[1]

A system’s complexity may be of one of two forms: disorganized complexity and organized complexity.[2] In essence, disorganized complexity is a matter of a very large number of parts, and organized complexity is a matter of the subject system (quite possibly with only a limited number of parts) exhibiting emergent properties.

Examples of complex systems for which complexity models have been developed include ant colonies, human economies and social structures, climate, nervous systems, cells and living things, including human beings, as well as modern energy or telecommunication infrastructures. Indeed, many systems of interest to humans are complex systems.

Complex systems are studied by many areas of natural science, mathematics, and social science. Fields that specialize in the interdisciplinary study of complex systems include systems theory, complexity theory, systems ecology, and cybernetics.

The term adaptation arises mainly in the biological scope as a trial to study the relationship between the characteristics (anatomic structure, physiological processes or behavior) of living beings and their environments. Currently, in biology, the term adaptation has a clear and concise meaning: a biological adaptation is an anatomic structure, a physiological process or a behavior's trait of an organism that has been selected by the natural evolution in such a way that this characteristic increase the probability of reproduction of an organism.

An adaptive system is a set of interacting or interdependent entities, real or abstract, forming an integrated whole that together are able to respond to environmental changes or changes in the interacting parts to where the environment itself as a whole is an interacting part.. Feedback loops represent a key feature of adaptive systems, allowing the response to changes; examples of adaptive systems include: natural ecosystems, individual organisms, human communities, human organizations, and human families, or concepts you find in ecology.

Some artificial systems can be adaptive as well; for instance, robots employ control systems that utilize feedback loops to sense new conditions in their environment and adapt accordingly.
Complex adaptive information systems are applicable to all of the following as well:

Agent-based model
Biological organisation
Complex (disambiguation)
Complexity (disambiguation)
Complex network
Dissipative system
Fractals
Innovation butterfly
Mixed Reality
System equivalence
Systems theory
2 Modern Neuroscience
2.1 Molecular and cellular neuroscience
2.2 Neural circuits and systems
2.3 Cognitive and behavioral neuroscience


If you want to get even deeper into the subject we can do that here:

We can also explore:

* http://mit.edu/6.933/www/Fall2001/Shannon2.pdf
* http://www.google.com/url?sa=t&rct=j&q= ... L7ARym9-9A

* http://en.wikipedia.org/wiki/Entropy_%2 ... _theory%29

* http://www.musiccog.ohio-state.edu/Musi ... heory.html

* http://en.wikipedia.org/wiki/Physical_information

* http://www.google.com/url?sa=t&rct=j&q= ... Won7-AEKGg[/url]
* http://arxiv.org/abs/cond-mat/9710259
* http://en.wikipedia.org/wiki/Information_science

See Also:

Digital physics
Entropy in thermodynamics and information theory
History of information theory
Information entropy
Information theory
Logarithmic scale
Logarithmic units
Reversible computing (for relations between information and energy)
Philosophy of information
Thermodynamic entropy

Abstract 1:
Information science (or information studies) is an interdisciplinary science primarily concerned with the analysis, collection, classification, manipulation, storage, retrieval and dissemination of information.[1] Practitioners within the field study the application and usage of knowledge in organizations, along with the interaction between people, organizations and any existing information systems, with the aim of creating, replacing, improving or understanding information systems. Information science is often (mistakenly) considered a branch of computer science. However, it is actually a broad, interdisciplinary field, incorporating not only aspects of computer science, but often diverse fields such as archival science, cognitive science, commerce, communications, law, library science, museology, management, mathematics, philosophy, public policy, and the social sciences.

Information science focuses on understanding problems from the perspective of the stakeholders involved and then applying information and other technologies as needed. In other words, it tackles systemic problems first rather than individual pieces of technology within that system. In this respect, information science can be seen as a response to technological determinism, the belief that technology "develops by its own laws, that it realizes its own potential, limited only by the material resources available, and must therefore be regarded as an autonomous system controlling and ultimately permeating all other subsystems of society."[2] Within information science, attention has been given in recent years to human–computer interaction, groupware, the semantic web, value sensitive design, iterative design processes and to the ways people generate, use and find information. Today this field is called the Field of Information, and there are a growing number of Schools and Colleges of Information.
Information science should not be confused with information theory, the study of a particular mathematical concept of information, or with library science, a field related to libraries which uses some of the principles of information science. But the principles of information underpin all fields of our very conscious existence.

And if the above isn't enough to understand, these videos might help demonstrate the reducibility of consciousness.:
Just google G-lock and Centrifuge videos on Youtube and you will have your answer.. The mind is a electromagnetic phenomenon and is physically effected.. And demonstrates reducibility of consciousness. If it weren't, thing like G-lock ect would be literally impossible.:

[youtube][/youtube]
[youtube][/youtube]
[youtube][/youtube]


And there is a reason why he has no published peer reviewed work on irreducible complexity... It's already been discredited. And I mean severely discredited to which reaches beyond biological systems and right into every other field of science..
For example Kenneth Miller uses the Type Three secretion system as an analogy and he goes into great detail in trying to make an argument as to why he thinks its a valid analogy. Unfortunately he fails, but at least he can produce a cohesive argument and does not resort to a vague type of refutation nor does he just resort to just saying that chemistry and physics alone can account for all this nano machinery we see in the cell including the bacterial flagellum. Even if he does believes that chemistry and physics alone can accomplish the task, he knows as a scientist this explanation is just to vague.
Science explanations is not at all vague here. There are 3 major parts to this.. Chemistry, Physics, and Chaos theory that deals with complex adaptive systems that can account and accomplish this. We also know it does because it's the same system in which is required to support a cognitive system capable of producing a conscious state.
If you continue to bring things up that I have repeatedly gone over then that means you did not take the time to read my previous statements and I refuse to repeat myself over and over.

THEMAYAN
Student
Posts: 76
Joined: Tue Feb 28, 2012 2:29 am

Post #100

Post by THEMAYAN »

Reply to jackelantern


You said...
And btw, most of behe's arguments have been debunked. I actually addressed him specifically in another thread...
When I asked if you could send link. You sent me to someones blog who only understood half of Behe's analogy and who didn't think cause and effect was relevant to understand Big bang cosmology. When I looked at the threads, (as per your words) I saw five comments. So lets go over them.

I doubt if you're ABDUL A. KHAN because he actually believes cause and effect are also relevant to big bang cosmology. I don't think you are JohnADavison who says that Behe is a fine intellect. I don't think your Jeff who brags that the Scopes trial was just down the road from his house. The only comment on thread thats left is from beajerry who says…. That's right!
All hail The Flying Spaghetti Monster for causing the big bang!
Through process of elimination I can only assume it is you. I don't mean to sound obtuse, but really??

What I find so interesting is that you did not even bother to read my earlier threads where I mentioned that Eugenie Scott actually agrees that irreducible complexity is a real scientific component of intelligent design. The real kicker here is that she actually says this in the same interview that you sent me.


I specifically ask you to stick to one subject at a time and you bombard me with a bunch of anti ID youtube videos. You could not even refute the BF in your own words and sent me a video with a soundtrack to Boston. Which by the way is one of my favorite bands. In fact I just posted a video of me playing along with backing tracks to More than a Feeling. So I guess thanks.

I already cited Millers argument and already mentioned the TTSS analogy concerning bacterial flagellum so I don't know why you sent video of the same. If you had the ability to defend it in your own words you would have.

You sent article below
Reducible Crosslinks in Hydroxylysine-Deficient Collagens of a Heritable
Disorder of Connective Tissue
You saw the word reducible in the title and thought it refuted or even had anything to do with Irreducible complexity. I can assure you it doesn't.


You also cited this article below..
Toward complex matter: Supramolecular chemistry
and self-organization
Jean-Marie Lehn* What are the steps and the
processes that lead from the elementary
particle to the thinking organism, the
(present!) entity of highest complexity
At the beginning it states.....
This essay therefore
will not be extensively documented (numerous reviews and books are available) but
rather outline some conjectures for the future, mainly based on, illustrated by, and
extrapolated from work performed in the
author’s laboratories
The writer admits that this article is based on conjecture and kudos to him for doing so. I can respect that.

He goes on to say...
The goal is to progressively
discover, understand, and implement the
rules that govern its evolution from inanimate to animate and beyond, to ultimately
acquire the ability to create new forms of
complex matter.


More kudos to writer in admitting the goal is to discover and understand, and personally I hope we one day reach that goal.

Again, I kindly asked you to stick to one subject at a time.
I'm already aware of many of these videos. Your not telling me anything new and If you cannot defend any of this in your own words then please don't bother sending me volleys of data. Remember quality is more important, and it would be more appreciated than quantity.

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