Evolution is a fact, let me show you why.

Creationism, Evolution, and other science issues

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Dr.Physics
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Evolution is a fact, let me show you why.

Post #1

Post by Dr.Physics »

Here is the evidence for biological evolution:

-Paleontology (fossil record)
-Genetics (comparative sequence analysis, phylogenetic reconstruction)
-Comparative anatomy (common morphology, and living examples)
-geographical distribution (Continental distribution, Island biogeography, Endemism of species, Adaptive radiations)
-Comparative physiology and biochemistry (Universal biochemical organisation and molecular variance patterns)
-Observed natural selection (E.Coli in the lab, lactose intolerance in humans, Nylon eating bacteria ect... )
-Observed speciation (examples: Blackclap, Drosophila melanogaster, Polar bear, ect...)
-Artificial selection (dog breeding, ect...)

in summation, evolution is one of, if not the most sound scientific fact that exists, because of the extensive reasons listed above. checkmate, now lets move on :)

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delcoder
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Post #321

Post by delcoder »

nygreenguy wrote:I am simply taking your claim to its valid conclusion. If it is that easy for you to disprove evolution then you SERIOUSLY should go and make money off of it. I can guarantee you could live large just with speaking engagements.

How is my conclusion in the least bit wrong?
I won't dignify this with a response. You chose to denigrate and insult. You know it and I know it so please stop trying to make a silk purse out of a sow's ear.

Epigenetics has been around for a while. Most of its mechanisms are well known except to a few die hard Neo-Darwinian theorists who still cling to insanity. Virtually everyone in biology that has enough math to figure out the odds of three gene mutations that work in concert know they are far too prohibitive to give them any credibility in the real world. This has been the dirty little secret of Neo-Darwinian evolution for decades.

Do you want to debate or are you going to waste time and effort defending insults?

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nygreenguy
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Post #322

Post by nygreenguy »

delcoder wrote:
nygreenguy wrote:I am simply taking your claim to its valid conclusion. If it is that easy for you to disprove evolution then you SERIOUSLY should go and make money off of it. I can guarantee you could live large just with speaking engagements.

How is my conclusion in the least bit wrong?
I won't dignify this with a response. You chose to denigrate and insult. You know it and I know it so please stop trying to make a silk purse out of a sow's ear.

Epigenetics has been around for a while. Most of its mechanisms are well known except to a few die hard Neo-Darwinian theorists who still cling to insanity. Virtually everyone in biology that has enough math to figure out the odds of three gene mutations that work in concert know they are far too prohibitive to give them any credibility in the real world. This has been the dirty little secret of Neo-Darwinian evolution for decades.

Do you want to debate or are you going to waste time and effort defending insults?
How is this an insult? If you just falsified one of the strongest scientific theories there are, then you really should capitalize on this. I dont need to debate. I accept your conclusion. Now go out there and show all them scientists that their education and work was in vain!

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nursebenjamin
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Post #323

Post by nursebenjamin »

delcoder wrote:[From Post 305] ... Consider the long term experiment conducted by Lensky. 50,000 generations of bacteria were studied for 20 years. The E Coli was separated into 12 populations. One of the populations developed the ability to metabolize citrate in the environment after about 23,000 generations. Proof of evolution? Not hardly. Buried in Lenski's notes and not in his press releases was the fact that the gene expression that finally allowed the E Coli to metabolize citrate was the fact that two other expressions had occurred prior to the final enabling expression. It seems all three were involved in the adaptation of citrate metabolism of the population.

Are you aware of what that does to the mathematical probability this newly acquired ability was acquired by chance? Consider there are approximately 3200 genes in the E Coli DNA. Since each can be either turned on or off that makes 6400 possibilities. Try 1 in 262 billion. If that's not enough to convince you the odds are prohibitive, consider genes can code for multiple proteins and a single mutation can affect only the ability alter only one such code. ...
delcoder wrote: [From Post 320] Virtually everyone in biology that has enough math to figure out the odds of three gene mutations that work in concert know they are far too prohibitive to give them any credibility in the real world. This has been the dirty little secret of Neo-Darwinian evolution for decades.
Your argument seems to be that the probability of a double or triple mutation is mathematically so low that evolution by natural selection is unlikely. This is pure hogwash.

According to Lenski, whose work you seem to admire, E. coli is a very common bacterium. Theres some hundred billion billion (10^20) of them in the world. A billion E. coli cells currently live in your own bowels. Mutations are rare events; however, [e]ven if [E. coli cells] divide just once per day, and given a typical mutation rate of 10^-9 or 10^-10 per base-pair per generation, then pretty much every possible double mutation would occur every day or so [to each gene][1]. Lenskis E. coli in the lab typically divide 6-7 times per day. Thats a lot of opportunity for evolution.[Ibid.] Periodic evolutionary innovations are not surprising if you actually do the math.

Your claim (not mine) is that the odds of a triple mutation in E. coli is 1 in 262 billion. Well, considering that there are 100 billion billion E. coli in the world, and E. coli divides 6-7 times per day, then those are pretty likely odds, wouldn't you say? What makes you think that evolution by means of natural selection is mathematically unlikely?
delcoder wrote:[From Post 305] ... Buried in Lenski's notes and not in his press releases was the fact that the gene expression that finally allowed the E. Coli to metabolize citrate was the fact that two other expressions had occurred prior to the final enabling expression.
Are you really suggesting that Lenski was trying to hide or bury results? If so, this is more hogwash. Lenski talks about a potentiating mutation right in the abstract of the article that describes his findings.[2] This article is publically available to anyone who has the ability to do a Google search or bold enough to ask a librarian for assistance.
delcoder wrote:[From post 317] ... Consider Lenski's 50,000 generation E Coli experiment in which one of 12 populations developed the ability to metabolize citrate. Buried in his notes are the facts that this newly developed ability was due to mutations in three genes. ...
By definition, epigenetics is the study of heritable changes in gene expression caused by mechanisms other than changes in the underlying DNA sequence. Changes in DNA sequence are known as mutations.

You claim that in Lenski's experiment, the newly developed ability to metabolize citrate was due to mutations. Since you have mentioned "gene mutations", you are no longer discussing epigenetics. It seems like you dont even know the meaning of the terms that you are talking about here.

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Post #324

Post by TheLesserFaith »

I like how my links were ignored.

Evolution is a scientific fact. Get over it.

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delcoder
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Post #325

Post by delcoder »

nursebenjamin wrote:By definition, epigenetics is the study of heritable changes in gene expression caused by mechanisms other than changes in the underlying DNA sequence. Changes in DNA sequence are known as mutations.

You claim that in Lenski's experiment, the newly developed ability to metabolize citrate was due to mutations. Since you have mentioned "gene mutations", you are no longer discussing epigenetics. It seems like you dont even know the definitions of the terms that you are talking about.
Ah, it never fails. Some one having no argument nit picks word usage and having no credible argument attempts to shift the debate. Are you aware that it has now been proven that epigenetic changes have been incorporated in DNA? The Weissman barrier has been disproved.

I am very much aware that in the strictest sense gene mutation and a changed gene expression are not the same. Since they both bring about a change and an epigenetic change can become a mutation, I use them interchangeably.

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Post #326

Post by delcoder »

TheLesserFaith wrote:I like how my links were ignored.

Evolution is a scientific fact. Get over it.
Hand waving will get you nowhere. You could post a thousand links and they would get you nowhere. Scientists have for decades been misinterpreting evidence, writing about it, and other scientists who have also misinterpreted evidence review it. Neo-Darwinian evolution has been disproved, not by creationists, but by scientists. Neo-Darwinianism is now the most colossal blunder in science.

Everyone defending Neo-Darwinian evolution now has egg on their faces and that includes you.

Get over it.

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Wyvern
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Post #327

Post by Wyvern »

delcoder wrote:
nursebenjamin wrote:By definition, epigenetics is the study of heritable changes in gene expression caused by mechanisms other than changes in the underlying DNA sequence. Changes in DNA sequence are known as mutations.

You claim that in Lenski's experiment, the newly developed ability to metabolize citrate was due to mutations. Since you have mentioned "gene mutations", you are no longer discussing epigenetics. It seems like you dont even know the definitions of the terms that you are talking about.
Ah, it never fails. Some one having no argument nit picks word usage and having no credible argument attempts to shift the debate. Are you aware that it has now been proven that epigenetic changes have been incorporated in DNA? The Weissman barrier has been disproved.

I am very much aware that in the strictest sense gene mutation and a changed gene expression are not the same. Since they both bring about a change and an epigenetic change can become a mutation, I use them interchangeably.
Actually NB did bring forth a substantive argument which effectively refuted your claim of improbability. I think you should reread his post and respond appropriately instead of ignoring what casts doubt onto your hypothesis.

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Post #328

Post by nursebenjamin »

delcoder wrote:
nursebenjamin wrote:By definition, epigenetics is the study of heritable changes in gene expression caused by mechanisms other than changes in the underlying DNA sequence. Changes in DNA sequence are known as mutations. ... It seems like you dont even know the definitions of the terms that you are talking about.
[From post 324] Ah, it never fails. Some one having no argument nit picks word usage and having no credible argument attempts to shift the debate.
Hogwash! Except for this point which illustrates your apparently lack of understanding of epigenetics, you have simply ignored my entire argument. The rest of my argument can be found in post 322.
delcoder wrote:Are you aware that it has now been proven that epigenetic changes have been incorporated in DNA? The Weissman barrier has been disproved.
Epigenetic inheritance is not the same thing as DNA mutations, which is what your argument was. Epigenetic inheritance occurs when phenotypic variations that do not stem from variations in DNA base sequences are transmitted to subsequent generations of cells or organisms.[3, page 2, italics added by me.]

Are you now aware that epigenetic inheritance does not involve variations in DNA base sequences, or gene mutations?
delcoder wrote:I am very much aware that in the strictest sense gene mutation and a changed gene expression are not the same.
Right! Gene mutations belong to the field of genetics, and inheritable gene expression caused by mechanisms other than mutations is epigenetics.
delcoder wrote:Since they both bring about a change and an epigenetic change can become a mutation, I use them interchangeably.
An epigenetic change doesnt become a mutation. An epigenetic change could potentiate an inheritable mutation that also occurs within the genome. But, it is simply wrong to use epigenetic inheritance and mutation interchangeably.
delcoder wrote:[From post 325] Hand waving will get you nowhere. ... Neo-Darwinian evolution has been disproved
It seems like you are doing a bit of hand waving yourself. Would you care to support this statement, or are you just going to make wild groundless claims? And no, epigenetic inheritance only enhances the modern evolutionary synthesis; epigenetics doesnt disprove evolution. I know that epigenetics is a field that is being sexed up in creationist and intelligent design circles, but nothing about epigenetics suggests that it doesn't fit or cant be incorporated within the existing framework of evolutionary theory.[3]



P.S. Also, would you mind sourcing the articles that you are getting your information from? Id be interested in reading your sources.

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delcoder
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Post #329

Post by delcoder »

nursebenjamin wrote:Your argument seems to be that the probability of a double or triple mutation is mathematically so low that evolution by natural selection is unlikely. This is pure hogwash.

According to Lenski, whose work you seem to admire, E. coli is a very common bacterium. Theres some hundred billion billion (10^20) of them in the world. A billion E. coli cells currently live in your own bowels. Mutations are rare events; however, [e]ven if [E. coli cells] divide just once per day, and given a typical mutation rate of 10^-9 or 10^-10 per base-pair per generation, then pretty much every possible double mutation would occur every day or so [to each gene][1]. Lenskis E. coli in the lab typically divide 6-7 times per day. Thats a lot of opportunity for evolution.[Ibid.] Periodic evolutionary innovations are not surprising if you actually do the math.

Your claim (not mine) is that the odds of a triple mutation in E. coli is 1 in 262 billion. Well, considering that there are 100 billion billion E. coli in the world, and E. coli divides 6-7 times per day, then those are pretty likely odds, wouldn't you say? What makes you think that evolution by means of natural selection is mathematically unlikely?
Unless you are advancing the probability of more than one source (individual E Coli) in the population your comments make no sense. If you are advancing this possibility the odds become even more ridiculous. The number of E Coli in the population is irrelevant. We still have to end up with a single subject that experiences random and spontaneous mutations in three loci that work together for natural selection to begin to work.

That aside the formula for figuring the odds of three gene mutations which work in concert to produce a specific variation in an individual E Coli subject is (ng * ne) * ((ng-1) * ne) * ((ng-2) * ne) / 1 * 2 * 3. I now find E Coli have over 5000 genes rather than 3200 so I will use 5000 as ng (number of genes). I will use 2 for ne (number of expressions for each gene). (5000*2) * (4999*2) * 4998 *2) / 1 * 2 *3 = one in 167 billion. Then you have to consider the possibility the subject would die before all three mutations occur. You also should consider the fact that a single gene can code for as many as 100 proteins. When you are done 1 in 262 billion is very charitable.

If you wish to carry the probabilities on to the possibility of one E Coli with a fitter trait taking over a population over a reasonable time you end up with 1 in the trillions.

With epigenetics, however, the possibility of many E Coli responding to the stress in the environment is very good. Every individual E Coli experiences the same stress, hence it is logical that perhaps over 50% would have the same genetic response.

One needs only to understand how epigenetics works and works quickly to understand why random and spontaneous mutations if they happened against the odds would be confronted with a population that has already changed. I like to say epigenetics has already got a hit and ran the bases while Neo-Darwinism is still selecting a bat.

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Post #330

Post by delcoder »

Wyvern wrote:Actually NB did bring forth a substantive argument which effectively refuted your claim of improbability. I think you should reread his post and respond appropriately instead of ignoring what casts doubt onto your hypothesis.
"effectively?" Did you actually say "effectively refuted your claim of improbability?" Are you aware that the number of bacteria is irrelevant? Are you aware their reproduction rate is irrelevant? Do you know anything about probability?

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